qc.seqkit

Liatir.qc.seqkit() runs seqkit stats (with -a for all statistics by default) and returns a rendered Liatir ToolOutput.

Signature

seqkit(args: { input: string; all?: boolean; threads?: number }): Promise<ToolOutput>

Arguments

Field	Type	Description
input	string	Path to the FASTA/FASTQ file to analyze.
all	boolean	Compute all statistics (-a). Default true.
threads	number	Worker threads. Omit to let Liatir choose a safe local value.

Example

const output = await Liatir.qc.seqkit({ input: "/path/to/reads.fastq.gz" });

Result

Returns a standard Liatir ToolOutput, rendered by the same viewer components as native tools. Throws if seqkit exits non-zero or its output cannot be parsed.

Requires the seqkit binary — check availability with Liatir.deps.check.